Sequence ID | hg18.chr11 |
---|---|
Location | 93,103,215 – 93,103,287 |
Length | 72 |
Max. P | 0.819693 |
Location | 93,103,215 – 93,103,287 |
---|---|
Length | 72 |
Sequences | 6 |
Columns | 75 |
Reading direction | reverse |
Mean pairwise identity | 59.81 |
Mean single sequence MFE | -14.44 |
Consensus MFE | -5.69 |
Energy contribution | -5.92 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.29 |
Mean z-score | -1.70 |
Structure conservation index | 0.39 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>hg18.chr11 93103215 72 - 134452384 GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCUUUAGAGGAUC ((....((((((.-......(--(((((((.....))))))))......))))))..))..(((....))).... ( -16.72) >panTro1.chr9 95004955 72 - 136640551 GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAUAAAUCUUUUGACUCCAGCUCUUUAGAGGAUC ((....((((((.-......(--(((((((.....))))))))......))))))..))..(((....))).... ( -16.72) >rheMac2.chr14 92292658 68 - 133002572 GGUUAAUCAAAAU-UUCUCUU--CUUCAGGGCAAACUUGAAGAU----CUUUUGACUCCAGCUUUUUAGGGGAUC ......((((((.-......(--(((((((.....)))))))).----.))))))((((.........))))... ( -14.90) >bosTau2.chr29 546812 59 - 45822729 AUUUAACCAGUAUCUACUCUC--CUUCAGGGCUACCUUGAAGAUGACAACCCUGGA--------------GGAGC ..................(((--((((((((....(........)....)))))))--------------)))). ( -18.10) >canFam2.chr21 44002892 67 + 54024781 AUUUAACCAGUGUCUGCUUUCGUCCUCAGUGCUAUUUUGAAGAUCAUCACUCUGGC--------UUUGGUGGAAC .(((.(((((.(((.......(((.((((.......)))).))).........)))--------.))))).))). ( -10.89) >dasNov1.scaffold_2894 16535 55 - 85457 ---------AAUU-UUUUUCU--UUUCUAGGCUAUCUUGAAGAUCUUGUUUCAAGC--------UUCAGAGGAAU ---------....-......(--((((((((((....(((((......))))))))--------)).)))))).. ( -9.30) >consensus GGUUAAUCAAAAU_UUCUCUU__CUUCAGGGCAAACUUGAAGAUAAAUCUUCUGAC________UUUAGAGGAUC .......................(((((((.....)))))))................................. ( -5.69 = -5.92 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Nov 24 16:48:49 2006